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---> Material for the lecture (slides, papers, software) <---

1. What is Systems Biology any why do we need it

  • Skript (Very Draft Lecture Notes) (These lecture notes are created for a full systems biology lectures; nevertheless you can use the respective chapters for this lecture, too.)

2. Reaction networks and modeling with differential equations.

  • How to translate biochemical reactions to differential equations?

3. Gene regulatory network motifs I (cf. U. Alon)

You can also watch Uri Alons video lectures (Lecture 2 - 4) avaiable at youtube. I basically took all the content from there. Except the relation between a reaction network and a regulatory network, which I showed at the beginning of the lecture. An analog deviation can be found in Alon's book "Systems Biology".

4. Gene regulatory network motifs II (cf. U. Alon)

5. Gene regulatory network motifs III (cf. U. Alon)

7. Boolean networks for modeling gene regulatory networks

8. Practical Exercise (planned)

  • Simulation using COPASI/Matlab (practical exercise, Location: FRZ Linux Pool)

X. Stochastic systems (not this year)

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Topic revision: r7 - 2019-10-15 - PeterDittrich
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