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---> Material for the lecture (slides, papers, software) <---

1. What is Systems Biology any why do we need it

2. Basic mathematical concepts of modeling with differential equations.

How to translate Biochemical reactions to differential equations

3. Gene regulatory network motifs I (cf. U. Alon)

Look at the Cell Snapshot: http://www.sciencedirect.com/science/article/pii/S0092867410011360

You can also watch Uri Alons video lectures (Lecture 2 - 4) avaiable at youtube. I basically took all the content from there. Except the relation between a reaction network and a regulatory network, which I showed at the begining of the lecture.

4. Gene regulatory network motifs II (cf. U. Alon)

5. Stochastic systems

6. Systems Biology Markup Language (SBML)

7. Boolean networks for modeling gene regulatory networks

*. (not 2014/15) Simulation using COPASI/Matlab (practical exercise, Location: FRZ Linux Pool)

8. DNA-Sequencing Technologies & Devices (by Matthias Platzer)

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Topic revision: r5 - 2016-12-06 - PeterDittrich
 
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