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Virtual Cell

http://www.nrcam.uchc.edu/

  • UI: Java-enabeled Webbrowser
  • no fee, but registration required
  • uses PDE/ODE-Solver
  • overlay of images and simulation results

E-Cell

http://www.e-cell.org/

Virtual Microbial Cell Simulator (VMCS)

http://www.emsl.pnl.gov/nwgrid/images/cell_ncmir/cell_split_files/v3_document.htm
http://www.biomolecular.org/research/virtualcell/index.html

  • overlay of images and simulation results

In Silico Cell

http://www.physiome.com/pdf/ps013insilicocell_%202_02_01.pdf

  • simulation suite (commercial)

Mcell

http://www.mcell.psc.edu/

  • Monte Carlo Simulator

Silicon Cell

http://www.bio.vu.nl/hwconf/Silicon/index.html

Whole Cell Model

http://www.maths.dundee.ac.uk/smb03/cell.html

  • Igor Goryanin, GlaxoSmithKline

Papers

  • Foundations of Biochemical Engineering: Kinetics and Thermodynamics in Biological Systems (Acs Symposium Series, No207), Cornell Microbial Cell model for E-Coli
  • Shuler, minimal cell papers
  • Caulobacter Crescentus Shapiro/McAdams / virtual cell

ObjectGenomicNet

-- FlorianCentler - 29 Jul 2003

Topic revision: r9 - 2014-10-09 - TWikiAdminUser
 
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